RAxML

RAxML is open-source command-line software for maximum-likelihood phylogenetic tree inference, tree and alignment analyses, and evolutionary placement of short reads.

6.7/10 TechZella Score
Visit Website ↗
5 key claims verifiedOur editorial team checked this profile against vendor documentation, product documentation. Supported by 4 documented sources.
Editorial overview

Aggregated Overview

The manual and repository document tree searches, rapid bootstrapping, partitioned analyses, and short-read placement. It is free under GPL and supports parallel builds, but uses a command-line workflow. No public review ratings were verified; user sentiment is unscored.

This profile combines documented product information and independent evidence where available. It is not a hands-on test unless TechZella explicitly identifies one.

Overview

RAxML, short for Randomized Axelerated Maximum Likelihood, is software for inferring phylogenetic trees using maximum likelihood. The manual also documents tree and alignment analyses and evolutionary placement of short reads.

The project distributes source code through GitHub. RAxML is suited to users comfortable with command-line analysis and configuring computational resources. Its manual documents parallel build options, and its official site provides estimates of memory needs based on dataset characteristics.

Decision guide

RAxML Decision Snapshot

A quick way to understand who this product may suit, where its limits matter, and which facts are most relevant before you compare alternatives.

Best suited to

Researchers and bioinformatics teams running maximum-likelihood phylogenetic analyses on aligned DNA, protein, or other supported sequence data, especially where command-line or cluster workflows are appropriate.

Look elsewhere if

Users seeking a supported graphical interface, guided setup, or a hosted product with vendor support. The project documents a command-line tool and says its author does not support the separate GUI, and should evaluate alternatives such as IQ-TREE or FastTree instead.

Platforms

Linux, macOS

TechZella assessment

6.7/10

Decision context

RAxML — What Sets It Apart?

These are the product-specific differences that may matter when deciding whether the software fits your workflow. They are based on documented evidence rather than a universal ranking.

  • Combines maximum-likelihood tree search with rapid bootstrap analysis in one run.
  • Includes an evolutionary placement algorithm for inserting query sequences into a reference tree.
  • Provides sequential, Pthreads, MPI, and hybrid MPI/Pthreads build options.
Editorial assessment

RAxML Pros & Cons

Pros

  • Open-source code is available under GNU GPL.
  • Supports maximum-likelihood inference, rapid bootstrapping, partitioned analyses, and evolutionary placement.
  • Repository documentation includes parallel build variants.

Cons

  • Command-line use requires users to manage inputs, parameters, installation, and compute resources.
  • The project does not support its separately developed graphical interface.
  • Memory requirements depend on dataset and model characteristics.
Operational limits

RAxML Gotchas & Operational Limits

These are documented constraints or practical friction points that may matter before you adopt the product.

RAxML is primarily a command-line tool, and the project says there is no official GUI it supports.

Teams expecting a maintained desktop interface may need to use a separately developed GUI or a web portal, each with its own support and workflow considerations.

Evidence source ↗

RAxML's memory demand depends on taxa, distinct alignment patterns, data type, and model choice.

Large alignments or model choices can require substantial memory, so users should estimate resource needs before running analyses on shared systems.

Evidence source ↗
Plans & pricing

RAxML Pricing & Plans

Free

Free

Open-source software available under GNU GPL. Users supply the computing environment for local execution; no paid plan or trial was listed by the project.

Check current pricing →

Pricing may change. Verify current plans on the vendor's website.

Cost context

Total Cost & Hidden Costs

Additional costs or implementation requirements that are documented in the available evidence.

Implementation and onboarding time

No vendor onboarding service or implementation estimate was found. The project provides a manual and tutorials; installation may involve compiling a suitable build and preparing compatible alignments and run parameters.

Evidence source ↗

Hosting and infrastructure

The software is distributed as source code for local installation; compute and storage are therefore determined by the user's workstation or cluster. The official page provides model- and alignment-dependent memory estimates.

Evidence source ↗

License and ancillary fees

The code is available under GNU GPL. No product subscription or paid plan was listed in the official project pages checked; costs for third-party compute services are not specified there.

Evidence source ↗
Compare options

RAxML Competitors & Alternatives

Compare similar products directly, then see which alternatives may make more sense when your requirements differ.

Direct competitors

These products address broadly similar requirements. The descriptions focus on documented reasons a buyer might compare them with RAxML.

Capabilities

RAxML Features

Phylogenetic analysis

  • Maximum-likelihood tree inference
  • Rapid bootstrap analysis
  • Partitioned alignment analyses
  • Tree and alignment post-analysis
  • Evolutionary placement of short reads

Execution

  • Sequential builds
  • Pthreads builds
  • MPI builds
  • Hybrid MPI/Pthreads builds
Product details

RAxML Specifications

LicenseGNU GPL
Software interfaceCommand line
Latest listed version8.2.13
Native APINot documented in the official materials reviewed
DeploymentLocal installation or third-party web-service workflows
Verified platformsLinux and macOS build materials
Deployment

Deployment & System Footprint

Verified installation, hosting, administration, or environment details that can affect implementation.

Installation or hostingOpen-source source code is available from GitHub. The README documents compiling Linux sequential, Pthreads, MPI, and hybrid variants; the repository also contains macOS Makefiles. Source ↗
Web executionThe Exelixis Lab page links to external tree-building and sequence-placement web services, including CIPRES; these are not the same as a native hosted RAxML subscription. Source ↗
Our evidence-based assessment

TechZella Score

A proprietary editorial score based on product capabilities, usability, value, performance, support and user sentiment evidence.

6.7/10Moderate confidence
Features8.5
Ease of Use5.5
Value for Money10.0
Performance8.0
Support5.0
User Sentiment0.0

The manual and repository document tree searches, rapid bootstrapping, partitioned analyses, and short-read placement. It is free under GPL and supports parallel builds, but uses a command-line workflow. No public review ratings were verified; user sentiment is unscored.

Methodology v1.0. The assessment weighs feature coverage (25%), ease of use (15%), value for money (20%), performance (15%), support (10%) and user sentiment (15%), using researched product evidence and verified review evidence where available. It is a TechZella editorial assessment, not a direct user-review average.

Editorial transparency

Our Review Methodology

Key claims are linked to the sources used to verify them. This evidence record is separate from third-party user ratings.

TechZella evaluates software using documented product capabilities, pricing information, usability and value considerations, independent user evidence where available, and competitive context. The assessment is an editorial review, not a hands-on test unless one is explicitly identified. Our editorial assessment is based on 4 documented sources.

What TechZella adds
  • Combines maximum-likelihood tree search with rapid bootstrap analysis in one run.
  • Includes an evolutionary placement algorithm for inserting query sequences into a reference tree.
  • Provides sequential, Pthreads, MPI, and hybrid MPI/Pthreads build options.
Important limitations
  • The documented workflow is command-line based and requires users to compile or obtain suitable binaries.
  • The project states that it does not support the separately developed graphical interface and directs users to a community group for help.
  • The manual gives memory estimates that vary with taxa, distinct alignment patterns, and selected model, making resource planning data-dependent.
Evidence-backed claims
RAxML performs sequential and parallel maximum-likelihood inference of large phylogenetic trees and also supports tree post-analysis, alignment analysis, and evolutionary placement of short reads.

The RAxML v8.2 manual describes these principal functions.

View source ↗Verified 2026-11-11
RAxML version 8 is available under GNU GPL.

The peer-reviewed RAxML v8 paper lists the code availability and GNU GPL license.

View source ↗Verified 2026-11-11
The latest release listed on the standard-RAxML GitHub releases page is v8.2.13, which notes added compatibility with ARM instruction sets.

The GitHub releases page labels v8.2.13 as the latest release and describes ARM compatibility.

View source ↗Verified 2026-11-11
The project documents rapid bootstrap analysis, partitioned analyses, and evolutionary placement workflows.

The RAxML v8.2 manual describes the rapid bootstrap option, partition files, and sequence-placement functions.

View source ↗Verified 2026-11-11
A benchmark on 19 empirical phylogenomic datasets found RAxML/ExaML performed close to IQ-TREE for concatenation-based inference, while results varied by data and search strategy.

The published comparison reports IQ-TREE had the best-observed likelihoods across the tested concatenation datasets, with RAxML/ExaML close behind.

View source ↗Verified 2026-11-11
Common questions

RAxML FAQs

Answers begin with the clearest available response, followed by the context that helps you act on it.

Is RAxML free?
Yes. Its code is available under GNU GPL, and the project does not list paid plans.
Does RAxML have an official graphical interface?
No. The manual says the project does not support an official GUI. It points to a GUI developed separately by researchers.
Can RAxML run analyses in parallel?
Yes. The project documents Pthreads, MPI, and hybrid MPI/Pthreads builds.
Can RAxML place short reads into a reference tree?
Yes. The manual documents an evolutionary placement algorithm for placing sequences into a reference tree.
Does RAxML provide an API?
The official project materials reviewed describe command-line software and web-service links, but do not document a native product API.
Community feedback

Reviews

No reviews yet. Be the first to share your experience.

Write a Review
Directory

Recently added Open Source Software